rs260260893 SNP Detail

Summary

• ID
  rs260260893
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76116491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCACGCG TGCACACGCC
  CCAGCTCCCT GCTCCAAGAG CACTGGCGTG CGAAGAGGTG AATGGGGCTC TGTCTCAGCG
  GGGGTGGCAT AGAGTGGGGG CACAATGTGG GCTCTGTGCC TCGCCCTCGG GCCAAGGGCT
  GAAAAAGAGT CAACGGTCCT CAAGCTGGTG CCTCTCTCGA CCCCACTCCA CCGCGGGGCC
  S
  TTCAGTGGCT GTCTCTGTTC CAGCCCCCAA CCGAGCCTGC CTTCATCGCG GCGTTTTCTG
  CCCACACTCA AGCACCTCCC GTCCAGTTCC GCAATTTCCT GATCCCAGGG AGGTGTTGAT
  CTCTGCATAG AGCAAGAGGG GCTGTGAAGC AGCACCTAAT TCCGGGTGGT CTGAGGCCAT
  CCACCCCTAC CCGCCTTCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss394611256	MGP_WTSI_15_76062721	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs260260893					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394611256	MGP_WTSI_15_76062721	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76116491 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7221	CpG island 7221	within coordinates
Parp10	poly (ADP-ribose) polymerase family, member 10	704 bp downstream
Plec	plectin	913 bp upstream
Rr504679	regulatory region 504679	1271 bp distal
Rr504680	regulatory region 504680	771 bp distal
Rr504681	regulatory region 504681	808 bp proximal
Tssr134946	transcription start site region 134946	237 bp upstream
Tssr134947	transcription start site region 134947	215 bp upstream
Tssr134948	transcription start site region 134948	195 bp upstream
Tssr134949	transcription start site region 134949	263 bp downstream
Tssr134950	transcription start site region 134950	1510 bp downstream