rs260271106 SNP Detail

Summary

• ID
  rs260271106
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108532645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAACTTAG GACCTTTGGA
  AGAGGTTATT GCAGAGAATC TGCGTTGAGG TTCTAGCAAG GGGAAGGGGT TGGTTGGTGG
  CTTACAGCTA CTCACAACTC TAGTTGTGTT CCTAACCGCT GAGCCATCTC TCCAGTACCA
  GCATAGGAGT CTTCATAATT AGCTCCTGGC CCTGCTTAGA GATCTATCCT TTCTTTTGAT
  M
  ATGCCATTTA ACCACCAAAT TCTTTCTTTA AATGTACTAG TCTTGCTCTC ATTCACCTTA
  AGCCCTCTAC ATGAACTGTT CACTCCACCA GAAGAGCTCT CCCTACAAAA CCCCAAATAA
  TAGTTGGCTG CCTGAATTCT TCAAGTTTCC ACTCCAACTT GATACCCTCA TTGTATCCTA
  CTCTAACCCT TCATAATCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388619	CHEV_7_116076952	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260271106					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108532645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	828 bp proximal
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	504 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	977 bp upstream
Rr400539	regulatory region 400539	719 bp upstream
Rr652951	regulatory region 652951	735 bp distal
Rr652952	regulatory region 652952	489 bp proximal
Rr652953	regulatory region 652953	709 bp proximal
Tssr68456	transcription start site region 68456	967 bp upstream
Tssr68457	transcription start site region 68457	1079 bp upstream