rs260275689 SNP Detail

Summary

• ID
  rs260275689
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70824248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTATAGG ACTGAGTCTG
  GAAAATTTTG GTGATGAGCA CACTTAATAG TTTCATTAAA CCAAGGAAGT AAGTTGCAAA
  GGGTAAGAAT TACTCTCTTT CTGAATCACT CCCGACTTTC CTTCCTGGTA GTTTACCAGG
  AGGGAGCCTG TATGGACAGG TTGGAAATGA AAGGAAGGAA GGATAAGATA CAGAGAAGCC
  M
  TGGGAGGTAG GAGGCTTGCT GTGAGATCTG AGTTACAAAG GGCAGCAAAG GATTGCTTGT
  CAATCAGGAG GACCACTTTC CTCCTGCTCA GACACAAGTG AAAATAGAGG AGGTGTGTTG
  GGAGGAGAGA GTGTGTGGTC CCTGTTAACA GTAGTGTGGA GTCTGCAGAG TGTGAATGAG
  TGAGAAGTCA TGGGCAAGCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321816172	CHEV_6_70797258	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260275689					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70824248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17515	CpG island 17515	1947 bp distal
Eif2ak3	eukaryotic translation initiation factor 2 alpha kinase 3	within coordinates
Rr631846	regulatory region 631846	458 bp proximal