rs260287645 SNP Detail

Summary

• ID
  rs260287645
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:43634646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGAAATGT ATTTTTGGTT
  TCAGCTACTA GTTTCTGGCA CATAGGTCCT GTTCTCAATT CTCTGACTGA AGCAGTTTAG
  GAGAAAAGAG GATTTATGTG GCTTATACCT GGAGTTCACG TCCACCATCG AGAGACGTCA
  GGGCAGGAAC TAAAGCAGGA ACCTGAACCA AAACCCACAG AGGGATGCTG CTTACCACTC
  T
  CCCCCCCCCC CGTCCCCCAC CCCCCCTCCC CCCGCGCCTT GCTCACTAGC TTTCTCATAT
  AGCCCAGGCC CATCTGCCCA GGGATGGTGC ATTGTGGTGC CGTGAATTGT GGGCTGGGCC
  ATCCTTGGCG CTTTGGCTCT CCCTGTGTAT TTTGTCCCAT GCATCTTTAT TGCTGGATAT
  TTGATCATGT TGTGAACCCC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CE/J	CZECHII/EiJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J
ss380199163	MGP_WTSI_10_43478456	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CE/J	CZECHII/EiJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J
rs260287645					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380199163	MGP_WTSI_10_43478456	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:43634646 () rs orientation: forward

Symbol	Name	Function Class
1700027J07Rik	RIKEN cDNA 1700027J07 gene	within coordinates
Rr384598	regulatory region 384598	642 bp upstream
Rr430868	regulatory region 430868	10 bp distal