rs260293322 SNP Detail

Summary

• ID
  rs260293322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:18268923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTTGTGTG AGCACACAGG TACACTCACA
  TCCAAACCCA CCCATGcaca cacagaaaca gacagacaca cacacacaaa cacacacaca
  caaatacata tgcactcaca gaaacacacc cacatccaaa cccacccatg cacacagaaa
  Y
  agacacacac aaactcatgt acacacagaa acaaacacgc atatgcacat gcatgcacac
  acaGAAACAG ACAGACACTC ACCCGAacac acacatgcac acacagaaac agacatgcag
  acacacccaa acacacacat gcacacacag                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323928267	CHEV_12_18225728	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260293322					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:18268923 () rs orientation: forward

Symbol	Name	Function Class
Bnip3l-ps	BCL2/adenovirus E1B interacting protein 3-like, pseudogene	1668 bp downstream
Gm40879	predicted gene, 40879	1007 bp upstream
Gm58964	predicted gene, 58964	1249 bp downstream
Tssr112909	transcription start site region 112909	1704 bp downstream