rs260295682 SNP Detail

Summary

• ID
  rs260295682
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81067702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACACATGC ACTGGCACAT
  GCACACACAC ACACACACAC ACACACAAAC ATTTAAAGAG GGGTGGGGGC GTGGTCAGAG
  GTGATGTCCT ATGTAGAATT CAGCCAGTGG TCAGGGGTAG AGCTCTGCCT AGTATGGCAA
  GCAAGGGTCC TGGGGAAAAT GGAGACTAAG CTACAATTTG ATTTAGCAGC TGAGAACTGC
  R
  GTTGATTTCC AGACGTTACC AGAAGTAAAA GAGAGCAGAG AAGGATGTCC CCAGTGTCCA
  TAAAGAACTA ATCGCCCAGA CTTTGGTCCC TGAAAGTGTG AGAGAATAAA TGTTTGGGGT
  TTAACCCCCC TCCATTCAGT TTCTTATCTT TCCTGGTAAC TAATATAAGA CCCCACATAG
  TAGTGGATCT CCAAGGTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381033019	MGP_WTSI_10_80694613	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260295682					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381033019	MGP_WTSI_10_80694613	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81067702 () rs orientation: forward

Symbol	Name	Function Class
Atcay	ataxia, cerebellar, Cayman type	1035 bp upstream
Cpgi1955	CpG island 1955	1136 bp distal
Cpgi1956	CpG island 1956	956 bp proximal
Rr435566	regulatory region 435566	1046 bp distal
Rr435567	regulatory region 435567	1197 bp distal
Rr435568	regulatory region 435568	545 bp distal
Rr435569	regulatory region 435569	797 bp proximal
Rr435570	regulatory region 435570	1298 bp proximal
Tssr94720	transcription start site region 94720	1279 bp upstream
Tssr98573	transcription start site region 98573	1099 bp upstream
Tssr98574	transcription start site region 98574	1043 bp upstream
Zfr2	zinc finger RNA binding protein 2	1287 bp upstream