rs260297471 SNP Detail

Summary

• ID
  rs260297471
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85923145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAAAGGG GGCTGGGCTC
  GGGAGTGGAG CCGAATGGAA GGAGGGAAGG GAGGAGGGGC CGGTCAAATA GACTTACACT
  CTGCAGTTCT TCTATTCCAG GACCTACATT GGTCTTCAGC AGTAGTTGAA AGCTGGCATT
  GAATGGGGTC TTGAGGTTAG CAATCTCACT CTGACCAGCG TAGGAGGGTG GGCTGGTGAG
  S
  ATACGAAGAT GGGCTTCCAG AAAGTCCTGA GTGGAGAACC GAGAGTTCCC TGCTCCACCA
  ACCCAGCAAG TGCTAGGGGT ACTCAAGAAG GGAGTGAAAG GGGACCTTGA GTTCCAACTG
  TCCAGGAGAA AGAACAATGG AGGCGAGAGG GCAGTGAGAG ATGTCAACTC TTCCTGAGGA
  GTGAAGTGCA GTTTCTAATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325486760	CHEV_17_86015057	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260297471					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85923145 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9588	CpG island 9588	1638 bp distal
Cpgi9589	CpG island 9589	258 bp distal
Cpgi9590	CpG island 9590	862 bp proximal
Cpgi9591	CpG island 9591	1371 bp proximal
Gm55783	predicted gene, 55783	982 bp downstream
Gm55784	predicted gene, 55784	435 bp downstream
Gm55785	predicted gene, 55785	985 bp upstream
Six3	sine oculis-related homeobox 3	within coordinates
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr149707	transcription start site region 149707	905 bp upstream
Tssr149708	transcription start site region 149708	707 bp upstream
Tssr149709	transcription start site region 149709	659 bp upstream
Tssr149710	transcription start site region 149710	565 bp upstream
Tssr149711	transcription start site region 149711	541 bp upstream
Tssr149712	transcription start site region 149712	255 bp upstream