rs260302179 SNP Detail

Summary

• ID
  rs260302179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74719995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTAACCT GTAGACAACT
  GGGCTCTCAA GAGTCTACCT TCTCACTAAA GATCACCTGG TCTTACCTAT AAACATACTT
  AGCCAGTTGT CTGGCATGTG CTTGTTAAAT GAATGTTACC TAGTATATCC CTAGTATTTT
  CCTTTGCTTT AGCTTCTTAG TGACACTGGA CATTTGCATA AGAGTTATTC ATGCTCAGGT
  Y
  CACACGCTAC AGTTCAATAC ATCAAGATCA AAGACTCCAT TCAGCTGTGC CGGGTGTCTT
  TCTCTAGGAT AAACCTGAAG GGGAAGGGAG ACCCGCCACC CTCTTTTGTT CTGTGTTCCT
  GGCAGCTCCT GAAGTAGGCA GGTAATGTTG GATAGGTTGG ATTGTCACGG TGGCCCGCTC
  TACGATCTTA TGGTTGGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383888976	MGP_WTSI_11_74642671	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260302179					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383888976	MGP_WTSI_11_74642671	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74719995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3246	CpG island 3246	530 bp proximal
Gm74357	predicted gene, 74357	776 bp downstream
Mnt	max binding protein	1751 bp upstream
Rr402716	regulatory region 402716	411 bp downstream
Rr402717	regulatory region 402717	1062 bp upstream
Rr450973	regulatory region 450973	1839 bp distal
Rr450974	regulatory region 450974	883 bp distal
Rr450975	regulatory region 450975	389 bp distal
Rr450976	regulatory region 450976	915 bp proximal
Rr450977	regulatory region 450977	1630 bp proximal
Rr450978	regulatory region 450978	1807 bp proximal
Tssr102911	transcription start site region 102911	1719 bp upstream
Tssr102912	transcription start site region 102912	1738 bp upstream
Tssr102913	transcription start site region 102913	1766 bp upstream
Tssr109144	transcription start site region 109144	722 bp downstream
Tssr109145	transcription start site region 109145	1490 bp downstream