rs260306990 SNP Detail

Summary

• ID
  rs260306990
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61927813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGTTCC CGGTTGCTGT
  TGTTCCTAGC AGTTCTTTGT TTTCCCATTA ACCTTTACAG CTGTGTTGAA CAGCAGCACC
  TTCTAGCTCC TGTGAAACTC CTCAGAGGCA AGTTGCAGCC ATCCACACCT CCGTAGCCTG
  TGTGTGTACC TCAGTGCCTA CAGTCTGCCA TGGGCGATTG TCTCTGGTGC AGCTGACCAG
  K
  CTCCCTGTCT CAATAAATCT GCTTAAAACT GTTTGTAGCA ACAAAGTTAT AAAGTGCAGC
  CATTGCTGTA GCTGTTTTTT TCTTTTCTTT TCTTTTCTTT TCTTTTCTTT TCTTTTCTTT
  TCTTTTCTTT CTTTTTTAAT AGTAAAAGAG CGCTCTGCTC TTATTTGTCT GGCCTGGTCA
  TGCCAGGCTG TGTGAGCACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325645784	CHEV_18_61954396	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260306990					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61927813 () rs orientation: forward

Symbol	Name	Function Class
Gm35919	predicted gene, 35919	111 bp downstream
Rr346544	regulatory region 346544	1613 bp distal
Rr346545	regulatory region 346545	413 bp distal
Rr351728	regulatory region 351728	1668 bp distal
Rr356351	regulatory region 356351	605 bp distal