rs260313752 SNP Detail

Summary

• ID
  rs260313752
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96245316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCATGGCT CCTTTCAGCT
  TGTGATAGAG TGTCAAAGAG CCTTGCACCC TAGAGGAGCT CACTTCAGTG AACAAGTCAT
  TTTGTGAGCC ATATCTCACT TATGGTCTTC AATGCTTCTC TTAAAAATGC CATGCCCCAA
  CGGCTCTCAG CTCTAAAAAT CCATTCTTAC TCAGAATGGA AAAAAAAAAA TCTGTCCTTA
  Y
  CCATTAACAA AATACTCTTA AAAAAGGATT TCAAAAAGGT AAAATTGTCT AAATAGAAAG
  GCAATAAATG GAATACACTT GTCCACCTTC ACTAACATTT TTTTTGACCC CTCACCTTAA
  AAGCAGCACA AAACCCAGAA GACCGATCAA CTCGGATTCA CTATTTCGTT TTAAAACAAT
  GAGTTCGCAC AGAGAAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323108160	CHEV_9_96263682	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260313752					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96245316 () rs orientation: forward

Symbol	Name	Function Class
Atp1b3	ATPase, Na+/K+ transporting, beta 3 polypeptide	within coordinates
Cpgi22162	CpG island 22162	240 bp proximal
Gm68867	predicted gene, 68867	within coordinates
Tssr86601	transcription start site region 86601	661 bp upstream
Tssr90956	transcription start site region 90956	1036 bp downstream
Tssr90957	transcription start site region 90957	1144 bp downstream
Tssr90958	transcription start site region 90958	1168 bp downstream