rs260314533 SNP Detail

Summary

• ID
  rs260314533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173109081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAGCCTG ATTCAAGAGA
  ATTGTCTCTT CTACCTGTCT CCCGCTCCCA GGCAGAGTCC CACTTAGCAT CGACGCCTAC
  ACCCCCATGC CGTTCACCGA ATGCTTGCTT CTCACTGAAG AGCTTCACGG ATAACTTCTC
  TAATAATCAC TTCAGCACAG GAACTAGGAG GCTCTCAGAA CAGCAAGAGC TACAGCAAGG
  Y
  GGGCTGAGCT TACCAAAGAT CCCATGGTTT GAGACTGCCA GAGCCAGATA GATCCCTTAG
  GGACCTTTCT GTTTGGTGGG ACACAGTTTG GTGGGACACT TTTTGGTAGG ACTGTTTGGT
  GGGACACTGC TTGGTGGGAC ATGGTTTGGT GGGACACTGT TTGGTAGGAC ACGGTTTGGC
  GGTGCTCTGA GGGAACTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320622168	CHEV_2_173092789	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260314533					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173109081 () rs orientation: forward

Symbol	Name	Function Class
Pmepa1	prostate transmembrane protein, androgen induced 1	Intron
Rr571915	regulatory region 571915	1678 bp distal
Rr571917	regulatory region 571917	136 bp distal
Tssr27982	transcription start site region 27982	1349 bp upstream