rs260317597 SNP Detail

Summary

• ID
  rs260317597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178164723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGCTGTT GGCCCTGCCT
  CGCCCCTGGC GGCGCCACCG TCACCGCGAA GAGCGAGGTG GGGCCGCTGC TCTTGCCCGC
  GGCCTCCTTG CCGGCACCAC GCTGCTGGGA AGGCTGCTGC TGCGCCGCCG CTGCCGGCGG
  TTGGGACTGC TGCTCCCCGT GACCGTTCTC GTCGCCCGCG CCCTCCTCCT CGTCGCCGAG
  Y
  TCGTCTTCCC CCTCCTGGAA GCCCTGGTCG TCGCCGTTCT CGTCTTCCGA CGCTGCCTCC
  TCTTCCTCCA TCGCGCCGGC GTCAGCCGCC CCCGCCGCCC CGTTCTCCTC GCCCAGCTCC
  ATCTGGTCGC CGTCCAGAGC GGCGATGCCC TCCTCCTCCT CGTCGTCTTC GGCGCCAGCC
  GCGGCCTCCT GCTCTAGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352535471	MGP_WTSI_1_180267289	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260317597					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352535471	MGP_WTSI_1_180267289	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178164723 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1090	CpG island 1090	within coordinates
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	within coordinates
Rr372516	regulatory region 372516	within coordinates
Tssr316	transcription start site region 316	71 bp upstream
Tssr317	transcription start site region 317	429 bp downstream
Tssr318	transcription start site region 318	646 bp downstream
Tssr10384	transcription start site region 10384	1235 bp downstream
Tssr10385	transcription start site region 10385	1021 bp downstream
Tssr10386	transcription start site region 10386	944 bp downstream
Tssr10387	transcription start site region 10387	within coordinates
Tssr10388	transcription start site region 10388	134 bp upstream
Tssr10389	transcription start site region 10389	712 bp upstream
Tssr10390	transcription start site region 10390	813 bp upstream
Tssr10391	transcription start site region 10391	1036 bp upstream
Tssr15481	transcription start site region 15481	1065 bp upstream
Tssr15482	transcription start site region 15482	994 bp upstream
Tssr15483	transcription start site region 15483	750 bp upstream
Tssr15484	transcription start site region 15484	40 bp upstream
Tssr15485	transcription start site region 15485	1 bp downstream
Tssr15486	transcription start site region 15486	82 bp downstream
Tssr15487	transcription start site region 15487	133 bp downstream
Tssr15488	transcription start site region 15488	490 bp downstream
Tssr15489	transcription start site region 15489	515 bp downstream
Tssr15490	transcription start site region 15490	548 bp downstream
Tssr15491	transcription start site region 15491	582 bp downstream
Tssr15492	transcription start site region 15492	616 bp downstream