rs260327516 SNP Detail

Summary

• ID
  rs260327516
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:23448034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTGGCCC CACTTGGCCA
  TGGCGGCGCT GACGACGACG GCCCTGGTAG CGGGAGCGCG CGGGTTTCCG GCCAGAAGGT
  CTGTGAGCCG ATCGCCCGCA GCTCCCAGAA AGTGCCAGAA GTCCCCGCCC CGGGCCGCCC
  CGGCCACAGC CTGCCCCGCC CCCCGCTGTC CGCTCCCCGC AGCCAGCTCC ACCCCACATC
  S
  ACTCTGCCCC AAGCCCGGTT ACGCCCCCAA TATGCCACAC CTCTGGGCGC CGCCCTCTGC
  AGGCTTCTCC CCCACCCCAC CCCCGACTTC GCCCCGCCTC TCTGCCCTAA GACCCCGCCC
  TATGCCTCCT GGCGCTGTCT TCTGCTAGGC TCCTCCCCGA CTTCGCCCCG CCCCCCGGTC
  CTAAGGCTCC GCCCTGGCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss382708841	MGP_WTSI_11_23398034	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs260327516					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382708841	MGP_WTSI_11_23398034	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:23448034 () rs orientation: forward

Symbol	Name	Function Class
1700030C12Rik	RIKEN cDNA 1700030C12 gene	within coordinates
Ahsa2	AHA1, activator of heat shock protein ATPase 2	4 bp upstream
Cpgi2649	CpG island 2649	within coordinates
Gm47279	predicted gene, 47279	195 bp upstream
Rr402454	regulatory region 402454	within coordinates
Rr443827	regulatory region 443827	287 bp distal
Rr443828	regulatory region 443828	within coordinates
Tssr100626	transcription start site region 100626	294 bp downstream
Tssr100627	transcription start site region 100627	245 bp downstream
Tssr100628	transcription start site region 100628	227 bp downstream
Tssr100629	transcription start site region 100629	202 bp downstream
Tssr100630	transcription start site region 100630	184 bp downstream
Tssr107128	transcription start site region 107128	72 bp upstream
Tssr107129	transcription start site region 107129	within coordinates
Tssr107130	transcription start site region 107130	15 bp downstream