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rs260328062 SNP Detail
Summary
  • ID
    rs260328062
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr15:101167472 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGTGGAGCTG GGGATGGTGA
GGTGGCCTAG TTCCCCCCAA CTCCTGGAAA CATGTCAGAA AGTACAGAGT GGGTGCCTGT
GGGATCAGCA TGCGGGGGGT GGTGGTGGTG AGGTGTGGGG CTGCTTTCTC CCGAGGCTAC
CGTGATAGAC AGTTGTACCT TGGCTGGCAG CCTCTACCCC ATTTCCAGGA TGTCAGTCTC
Y
GCAGACGTAT GGGGGAGGTG GGGAAGGGGT ATACAGAGCC TAGGGTGTGC CTGGGAATGT
ACTCCCAGGA AGTGACTGGT TGAAAAGTCA GCAGATCTCC TGGGGGATAG AGGGGTGGGC
TGAAGCTCTG TGGGTTGCCT CTCTCAGCCC TGACCTGTGA ACAGGGAGGC TGGGGGTTGG
AGGAACACAG CTTCCCCCTG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss395192972 MGP_WTSI_15_101100022 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260328062 SNP T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss395192972 MGP_WTSI_15_101100022 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:101167472 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Nr4a1 nuclear receptor subfamily 4, group A, member 1 within coordinates
Rr370021 regulatory region 370021 1631 bp downstream
Rr510002 regulatory region 510002 1019 bp distal
Tssr133218 transcription start site region 133218 1717 bp downstream
Tssr133219 transcription start site region 133219 1695 bp downstream
Tssr133220 transcription start site region 133220 1600 bp downstream
Tssr133221 transcription start site region 133221 1540 bp downstream
Tssr133222 transcription start site region 133222 175 bp downstream
Tssr133223 transcription start site region 133223 485 bp upstream
Tssr133224 transcription start site region 133224 528 bp upstream
Tssr133225 transcription start site region 133225 539 bp upstream
Tssr133226 transcription start site region 133226 560 bp upstream
Tssr133227 transcription start site region 133227 568 bp upstream
Tssr133228 transcription start site region 133228 586 bp upstream
Tssr133229 transcription start site region 133229 597 bp upstream
Tssr133230 transcription start site region 133230 675 bp upstream
Tssr133231 transcription start site region 133231 707 bp upstream
Tssr133232 transcription start site region 133232 726 bp upstream
Tssr133233 transcription start site region 133233 754 bp upstream
Tssr133234 transcription start site region 133234 772 bp upstream
Tssr133235 transcription start site region 133235 805 bp upstream
Tssr133236 transcription start site region 133236 854 bp upstream
Tssr133237 transcription start site region 133237 876 bp upstream
Tssr133238 transcription start site region 133238 909 bp upstream
Tssr133239 transcription start site region 133239 951 bp upstream
Tssr133240 transcription start site region 133240 1043 bp upstream
Tssr133241 transcription start site region 133241 1060 bp upstream
Tssr133242 transcription start site region 133242 1068 bp upstream
Tssr133243 transcription start site region 133243 1094 bp upstream
Tssr133244 transcription start site region 133244 1115 bp upstream
Tssr133245 transcription start site region 133245 1159 bp upstream
Tssr133246 transcription start site region 133246 1184 bp upstream
Tssr133247 transcription start site region 133247 1272 bp upstream
Tssr133248 transcription start site region 133248 1292 bp upstream
Tssr136545 transcription start site region 136545 708 bp downstream
Tssr136546 transcription start site region 136546 830 bp downstream
Tssr136547 transcription start site region 136547 906 bp downstream
Tssr136548 transcription start site region 136548 916 bp downstream
Tssr136549 transcription start site region 136549 950 bp downstream
Tssr136550 transcription start site region 136550 1056 bp downstream
Tssr136551 transcription start site region 136551 1132 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory