rs260329263 SNP Detail

Summary

• ID
  rs260329263
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:38940536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGC ACGGAGCTGA GAGCTGCGGG
  W
  GTGGGGAAGC GGAGCCCTGG CAGCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ
ss916045463	MGP_WTSI_3_38886387	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ
rs260329263					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916045463	MGP_WTSI_3_38886387	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38940536 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	within coordinates
Fat4	FAT atypical cadherin 4	mRNA-UTR
Gm56780	predicted gene, 56780	within coordinates
Gm65329	predicted gene, 65329	841 bp upstream
Rr575717	regulatory region 575717	852 bp distal
Rr575718	regulatory region 575718	1893 bp distal
Rr575719	regulatory region 575719	688 bp distal
Rr575720	regulatory region 575720	264 bp distal
Rr575721	regulatory region 575721	63 bp proximal
Rr575722	regulatory region 575722	1375 bp proximal
Rr575723	regulatory region 575723	1496 bp proximal
Rr575724	regulatory region 575724	1645 bp proximal
Rr575725	regulatory region 575725	1862 bp proximal
Rr575726	regulatory region 575726	1905 bp proximal
Tssr28930	transcription start site region 28930	1056 bp downstream
Tssr28931	transcription start site region 28931	685 bp downstream
Tssr28932	transcription start site region 28932	659 bp downstream
Tssr28933	transcription start site region 28933	623 bp downstream
Tssr28934	transcription start site region 28934	533 bp downstream
Tssr28935	transcription start site region 28935	500 bp downstream
Tssr28936	transcription start site region 28936	482 bp downstream