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rs260329399 SNP Detail
Summary
  • ID
    rs260329399
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:123260695 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCACTTAGTC CAGAGGACTT
ATTTCTGGCA TCTCACAAAT CCAAGGCATA CTGTAGAAAC AGGGTATATC ATTCCAGTTC
TTCCTGGAGT TTGAAGAGTC CCTTATGGTG GCACAGTCCT CCACCAAAAC TATATTGTTG
GGCTCCCCAG CATCCCAGAA GCTGTGAAGG AAAAACACAG GAGATCTTAA ATATCAGAAA
Y
AGCAGCCTTA ACATAGCAAA CAACTTACAT ATTTGTTATT TAACTATCAT TTTGGGAGAT
GGAAATTATA ATCTCCATTT TATCAATGAG AAAACCCATT TGCCTACATC ATCAGATGGT
GGGACATTAC TGGATTTTTA TGCTGTTATG CAGATCTATA GATTTAAACT CATAAAGGGG
CATCATGGTG AGTACTGCTG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss369922416 MGP_WTSI_6_123233754 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T C T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260329399 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss369922416 MGP_WTSI_6_123233754 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:123260695 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Clec4e C-type lectin domain family 4, member e within coordinates
Tssr58808 transcription start site region 58808 956 bp downstream
Tssr58809 transcription start site region 58809 319 bp downstream
Tssr58810 transcription start site region 58810 294 bp downstream
Tssr58811 transcription start site region 58811 205 bp downstream
Tssr63020 transcription start site region 63020 1232 bp upstream
Tssr63021 transcription start site region 63021 1154 bp upstream
Tssr63022 transcription start site region 63022 1115 bp upstream
Tssr63023 transcription start site region 63023 1060 bp upstream
Tssr63024 transcription start site region 63024 962 bp upstream
Tssr63025 transcription start site region 63025 930 bp upstream
Tssr63026 transcription start site region 63026 909 bp upstream
Tssr63027 transcription start site region 63027 871 bp upstream
Tssr63028 transcription start site region 63028 846 bp upstream
Tssr63029 transcription start site region 63029 818 bp upstream
Tssr63030 transcription start site region 63030 762 bp upstream
Tssr63031 transcription start site region 63031 732 bp upstream
Tssr63032 transcription start site region 63032 701 bp upstream
Tssr63033 transcription start site region 63033 687 bp upstream
Tssr63034 transcription start site region 63034 661 bp upstream
Tssr63035 transcription start site region 63035 646 bp upstream
Tssr63036 transcription start site region 63036 579 bp upstream
Tssr63037 transcription start site region 63037 546 bp upstream
Tssr63038 transcription start site region 63038 521 bp upstream
Tssr63039 transcription start site region 63039 453 bp upstream
Tssr63040 transcription start site region 63040 409 bp upstream
Tssr63041 transcription start site region 63041 362 bp upstream
Tssr63042 transcription start site region 63042 342 bp upstream
Tssr63043 transcription start site region 63043 325 bp upstream
Tssr63044 transcription start site region 63044 290 bp upstream
Tssr63045 transcription start site region 63045 210 bp upstream
Tssr63046 transcription start site region 63046 197 bp upstream
Tssr63047 transcription start site region 63047 176 bp upstream
Tssr63048 transcription start site region 63048 142 bp upstream
Tssr63049 transcription start site region 63049 118 bp upstream
Tssr63050 transcription start site region 63050 73 bp upstream
Tssr63051 transcription start site region 63051 51 bp upstream
Tssr63052 transcription start site region 63052 1451 bp downstream
Tssr63053 transcription start site region 63053 1561 bp downstream
Tssr63054 transcription start site region 63054 1728 bp downstream
Tssr63055 transcription start site region 63055 1755 bp downstream
Tssr63056 transcription start site region 63056 1796 bp downstream
Tssr63057 transcription start site region 63057 1829 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory