rs260340395 SNP Detail

Summary

• ID
  rs260340395
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122035032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAAAAGAGA AATGTATTTC TAATAGGATT GTGTCACAAT
  GTCCGGGGAC ACCATTTGGG TGTCCTGAAT AATTTTTCAA ACCTGAGTTT GACAGCATAG
  S
  CTTTGGCAGT CTCCTTTTAC CAGCAAGCAT GAAAGGTTCG GGTGCAGGAA GACACACAGA
  AGCTGTCAGA AGTACACGTC TAAAGAAACT GTGCTGTGC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320909854	CHEV_3_121944301	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260340395					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122035032 () rs orientation: forward

Symbol	Name	Function Class
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	1721 bp upstream
Rr375675	regulatory region 375675	1377 bp upstream
Rr584261	regulatory region 584261	1359 bp proximal
Rr584262	regulatory region 584262	1732 bp proximal
Rr584263	regulatory region 584263	1815 bp proximal
Tssr31477	transcription start site region 31477	1720 bp upstream
Tssr35442	transcription start site region 35442	1580 bp upstream