rs260340883 SNP Detail

Summary

• ID
  rs260340883
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173419986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCAGGAA ATGCAGCCGC
  TGCAGGTTGA AGGGGATGCC GACCATCAGG TCCAGCTCTT CTTTGAGCTC CCGCACTGTC
  ATGTCGTTGC GGCAGTTGGC CACGCGGAAC AGCTCCCCAG TCTCCTCCAG CTTCACCCGC
  AGGACATAGA CGTCAGGAGT CAAGTCTGGC GACACGGTGG AGGCAAGCGG GTCCCCTGTG
  K
  GCCCCCTAAC CTGTGCGCGG GCCCTGCTGG AGGGCTGAGT GTGGCGCGCG CCCGCCTTGG
  GGTCGTCCCC CTGCCGTTTC GGCGGACGCG CGCCCGCCCC CGCCACGTCT GCCGCCCTCC
  GCATGGCCCG CGTCATCCCG CGCGTCATCG CCGCCCCCGC CTGGGGCCCC CGGGACAGGA
  GAGGGGCGCC CGCGCTTCCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356672121	MGP_WTSI_2_173403694	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260340883					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356672121	MGP_WTSI_2_173403694	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173419986 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ankrd60	ankyrin repeat domain 60			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi12846	CpG island 12846			within coordinates
Gm74867	predicted gene, 74867			within coordinates
Gm74874	predicted gene, 74874			within coordinates
Rr571985	regulatory region 571985			244 bp distal
Rr571986	regulatory region 571986			within coordinates
Tssr27995	transcription start site region 27995			13 bp upstream
Tssr27996	transcription start site region 27996			within coordinates
Tssr27997	transcription start site region 27997			10 bp downstream
Tssr27998	transcription start site region 27998			22 bp downstream
Tssr27999	transcription start site region 27999			107 bp downstream