rs260343483 SNP Detail

Summary

• ID
  rs260343483
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7291110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAAGGGA AAAGGATGGA
  CCTGGACATT GTTTTGTTAA GTGAGGTGAT CCAGATTCAG AAAGGAAGAG GCAGGCGGAT
  TTCTGAGTTC AAAGCCAGCT TGGTCTACAG AGCAAGTTCC AGGAAGTCAG CCAAGCAGAG
  AAACCCTGTC TCGGGGAGAA AAAAGAAGAG AAAGAAAAGA AGACAGGCAG GCAGGCAGGC
  R
  GGCAGTGAAA TACTGGATGT TCTCTCTCAT GTACAGATGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTTGTGTG ATATGAAACT AGAAAGGAGA CAAAAGGGGA
  GAAAGAAGGT GTTGATGGAG GTGTTGATGA GGGGAGAGAA CAAAAATAGA AGACATGACA
  TGGCATGGAA GCAGGAAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325887813	CHEV_X_7001997	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260343483					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7291110 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	1883 bp upstream
Cpgi22567	CpG island 22567	1991 bp distal
DXImx8	DNA segment, Chr X, Immunex 8	within coordinates
Rr689605	regulatory region 689605	1702 bp distal
Rr689606	regulatory region 689606	1853 bp distal
Rr689607	regulatory region 689607	1567 bp distal
Rr689608	regulatory region 689608	1563 bp distal
Tssr162787	transcription start site region 162787	1930 bp upstream
Tssr162788	transcription start site region 162788	1897 bp upstream
Tssr162789	transcription start site region 162789	1875 bp upstream