rs260348963 SNP Detail

Summary

• ID
  rs260348963
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126813751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGTGGCC AGGAGGCCCC
  CAGCGGGCAG CTCCATTCCT GCTGGGAAGA AGACTCCGGC AGCTGGGGGA AGGCGGGAAG
  CAGTTTTTAT TAGATGGAGA ACTTGGAGGA ATAGGAAAAC CCAATTGGAA CGCGGGAAGA
  GCGGTGGGGG GGGGGGGGGA GGAGTGGTGG GGAGGCTTTT CTTGGAGTGC GGTCCTCTTA
  S
  AGCCGCGCGG AAGACGAAGT CGGATGGGCC TTAAACTTCC GGATTGGAGG GATCTGGTTT
  AAGTGCAAGG GCAGGCCTAC CCTCTGGATC CCCGGATTGG GCGCTGGGCT GTCCAGCGCG
  GGGATGGGAT AGCCGATTAG CGGTGAGCAG AGGCGAGGAC AGGCGGTATT GGGGAATATC
  ACAGCACATC TGATTGCTCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373083296	MGP_WTSI_7_134358093	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260348963					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373083296	MGP_WTSI_7_134358093	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126813751 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	17 bp proximal
Cpgi19732	CpG island 19732	632 bp proximal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	292 bp downstream
Rr655746	regulatory region 655746	865 bp distal
Rr655747	regulatory region 655747	861 bp proximal
Septin1	septin 1	within coordinates
Tssr69170	transcription start site region 69170	1949 bp downstream
Tssr69171	transcription start site region 69171	1942 bp downstream
Tssr69172	transcription start site region 69172	1907 bp downstream
Tssr69173	transcription start site region 69173	1716 bp downstream
Tssr69174	transcription start site region 69174	1450 bp downstream
Tssr69175	transcription start site region 69175	1431 bp downstream
Tssr69176	transcription start site region 69176	1390 bp downstream
Tssr69177	transcription start site region 69177	1376 bp downstream
Tssr69178	transcription start site region 69178	335 bp downstream
Tssr69179	transcription start site region 69179	318 bp downstream
Tssr69180	transcription start site region 69180	12 bp downstream
Tssr74959	transcription start site region 74959	1101 bp upstream
Tssr74960	transcription start site region 74960	362 bp upstream
Tssr74961	transcription start site region 74961	167 bp downstream
Tssr74962	transcription start site region 74962	435 bp downstream
Tssr74963	transcription start site region 74963	464 bp downstream
Tssr74964	transcription start site region 74964	506 bp downstream
Tssr74965	transcription start site region 74965	750 bp downstream
Tssr74966	transcription start site region 74966	800 bp downstream
Tssr74967	transcription start site region 74967	1104 bp downstream