rs260358223 SNP Detail

Summary

• ID
  rs260358223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122524600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCGCCCG ATAGACGGGC
  AGTATGACTT TGTCTCACCT TGCTTTTTCA CGGAGATACT ACATGGGGGT CAGTTTTCTC
  TCTTTTCTCA CGGAGCCTCT TCTGGACAGT TTTGGCGTTT TGCTTGTGAG TCTAGCCTTT
  CATGGCTGAG CGCTCTCTCC AGCCCAGATA TACTCTAAGT ACCCAGCCCT CCTTTCACCT
  Y
  CCACCCCCAT TATTAAGCCT TTCCCCATCA AATTCTGAGC ATAGAGGGAT CGGATGATAA
  CACAGAAAGT AGAGCGGTTT CTTTTTAAAA CATTACAGGA AGTTTGAGCC GAAGCACCAA
  GACAGACCAT CTCGACCTAG AATTATCTTG CTGGGAACCA CCAGTTTCCA GGGGTCACTA
  GTTACTCTTG AGACCTTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359508385	MGP_WTSI_3_122433869	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260358223					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359508385	MGP_WTSI_3_122433869	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122524600 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	16 bp distal
Pde5a	phosphodiesterase 5A, cGMP-specific	within coordinates
Tssr31509	transcription start site region 31509	1956 bp downstream
Tssr31510	transcription start site region 31510	1936 bp downstream
Tssr31511	transcription start site region 31511	1817 bp downstream
Tssr31512	transcription start site region 31512	1769 bp downstream
Tssr31513	transcription start site region 31513	1718 bp downstream
Tssr31514	transcription start site region 31514	1216 bp downstream
Tssr31515	transcription start site region 31515	1082 bp downstream
Tssr31516	transcription start site region 31516	1057 bp downstream
Tssr31517	transcription start site region 31517	1022 bp downstream
Tssr31518	transcription start site region 31518	894 bp downstream
Tssr31519	transcription start site region 31519	832 bp downstream
Tssr31520	transcription start site region 31520	798 bp downstream
Tssr31521	transcription start site region 31521	712 bp downstream
Tssr31522	transcription start site region 31522	690 bp downstream