rs260361809 SNP Detail

Summary

• ID
  rs260361809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:44509237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAAGCAG TATGAAGGAA
  GAGCCGCTGG GCAGCGGCAT GAACGCGGTG CGGACGTGGA TGCAGGGCGC CGGGGTGCTG
  GACGCCAACA CAGCGGCGCA GAGGTGGGTA CCGCTGGGGG ACCGTGGAGG AGAGGCCACC
  GGCTAGCGGG AGAGCCCGGA GACGGCGGCG CGGCTACCCG GGGCCTGGCC ACGCGAGTGC
  R
  TCTGCCGCTG CGCTGCGCTC GCCGCCCGAG CTCCGCGCTC CTCGGCTGCG CAGCACTCGT
  CGCCGGGTGG CCAGAGATCA GCGAGCTGCT GGAGGGAGCC GAGCCCAAGC TTTGCCGGCA
  CTTTCCGCAG CCCCATCTGC GAGTGTTTTC GTTTTGTTTT AACCCAGAAG AGGCGTCTCT
  GCAGCTCGGT GTTGGATAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383201278	MGP_WTSI_11_44431912	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260361809					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383201278	MGP_WTSI_11_44431912	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44509237 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2762	CpG island 2762	1107 bp distal
Cpgi2763	CpG island 2763	within coordinates
Cpgi2764	CpG island 2764	1362 bp proximal
D11Mit175	DNA segment, Chr 11, Massachusetts Institute of Technology 175	1071 bp proximal
Ebf1	early B cell factor 1	within coordinates
Gm37695	predicted gene, 37695	1394 bp upstream
Rr369170	regulatory region 369170	1097 bp downstream
Rr445653	regulatory region 445653	1083 bp distal
Rr445654	regulatory region 445654	within coordinates
Tssr101029	transcription start site region 101029	1108 bp downstream
Tssr101030	transcription start site region 101030	1074 bp downstream
Tssr101031	transcription start site region 101031	1049 bp downstream
Tssr101032	transcription start site region 101032	1013 bp downstream
Tssr101033	transcription start site region 101033	897 bp downstream
Tssr101034	transcription start site region 101034	867 bp downstream
Tssr101035	transcription start site region 101035	852 bp downstream
Tssr101036	transcription start site region 101036	780 bp downstream
Tssr101037	transcription start site region 101037	750 bp downstream
Tssr101038	transcription start site region 101038	707 bp downstream
Tssr101039	transcription start site region 101039	523 bp downstream
Tssr101040	transcription start site region 101040	475 bp downstream
Tssr101041	transcription start site region 101041	275 bp downstream
Tssr101042	transcription start site region 101042	206 bp downstream
Tssr101043	transcription start site region 101043	187 bp downstream
Tssr101044	transcription start site region 101044	168 bp upstream
Tssr107570	transcription start site region 107570	341 bp upstream