rs260368061 SNP Detail

Summary

• ID
  rs260368061
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88529264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCC AATTATCCTT TAAGAAGGGG
  R
  AAAAAAAAAT CCACACACAC AATGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375473988	MGP_WTSI_8_90326535	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	G	G	G	G	A	A	A	A	A	A	A	G	G	G	A	G	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260368061					SNP	G	A	G	G	G	G	A	A	A	A	A	A	A	G	G	G	A	G	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375473988	MGP_WTSI_8_90326535	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88529264 () rs orientation: forward

Symbol	Name	Function Class
Rr667021	regulatory region 667021	1201 bp proximal
Rr667022	regulatory region 667022	1793 bp proximal
Tssr82324	transcription start site region 82324	1754 bp downstream
Tssr82325	transcription start site region 82325	1775 bp downstream
Zfp423	zinc finger protein 423	within coordinates