rs260371167 SNP Detail

Summary

• ID
  rs260371167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126360641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCTTTA GAGACCTCAC
  ACTGGATGGA AAGCAAAGAA GAAAACCGGT ATTGGGCAGG CCTAGTGCTT TGGTTCTAAT
  TCAACCTTCT AGCTTCCCTG TGTGACGGAT GAGTTTTACT GTGTCCATTT CAAAGATAAG
  GAAACCGAGG CTCCTCTGTG TTAAGTTTTG CAGTGCCTTC TAGGGGGAAG GGGAGTGGGC
  R
  ATACTTAATC CAACATGGAG GCAGTGGAGG CTTTCAAACC ACATTGTATT GTTAAGAGGG
  GGAACCTGAG GACCCTAGAG TCACAGGGTG GAGCCAAGCC TTTGCACTCC TGCCCCTGGC
  TAGGCCGGGG GCTCAAGGAA GGGTGAGGGG CCCTGAGAGT CTGCCTGAAT TCGGCAGTTC
  CTGTTAGTAG CTTCCTCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373074812	MGP_WTSI_7_133904983	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260371167					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373074812	MGP_WTSI_7_133904983	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126360641 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19709	CpG island 19709	1131 bp distal
Mapk3	mitogen-activated protein kinase 3	within coordinates
Rr655591	regulatory region 655591	1858 bp distal
Rr655592	regulatory region 655592	862 bp distal
Rr655593	regulatory region 655593	1046 bp proximal
Tssr69058	transcription start site region 69058	1861 bp downstream
Tssr69059	transcription start site region 69059	1818 bp downstream
Tssr69060	transcription start site region 69060	1759 bp downstream
Tssr69061	transcription start site region 69061	1707 bp downstream
Tssr69062	transcription start site region 69062	1680 bp downstream
Tssr69063	transcription start site region 69063	870 bp downstream
Tssr69064	transcription start site region 69064	816 bp downstream
Tssr69065	transcription start site region 69065	725 bp downstream
Tssr69066	transcription start site region 69066	748 bp upstream
Tssr69067	transcription start site region 69067	1400 bp upstream
Tssr69068	transcription start site region 69068	1415 bp upstream
Tssr69069	transcription start site region 69069	1435 bp upstream
Tssr69070	transcription start site region 69070	1664 bp upstream