rs260374146 SNP Detail

Summary

• ID
  rs260374146
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46656573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTAGGTCT AAAAAGTTTA CCAAGTGGAG GTGAACTTTG
  TACAGCCAAG ACTTGCGTCT TGGCCTGAGT AATCAGGAGA AGGCAGAAAC AAACGGAAAA
  R
  AAAAAAAAAA AGAAAAAGAA AAAGAAAAAG AAAAAAGAAA AAAAGGGGGG GGGGAGTTTA
  TCAGAATTGC TTGCAGAGAG AGCACTGCCT GTTCGTTTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324333701	CHEV_13_46598466	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260374146					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46656573 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	within coordinates
Cpgi5539	CpG island 5539	464 bp distal
Gm35110	predicted gene, 35110	1172 bp upstream
Gm61509	predicted gene, 61509	within coordinates
Rr478915	regulatory region 478915	1239 bp distal
Rr478916	regulatory region 478916	1138 bp distal
Rr478917	regulatory region 478917	921 bp distal
Rr478918	regulatory region 478918	182 bp distal
Rr478919	regulatory region 478919	67 bp distal
Tssr119597	transcription start site region 119597	1212 bp downstream
Tssr119598	transcription start site region 119598	1181 bp downstream
Tssr119599	transcription start site region 119599	1049 bp downstream
Tssr119600	transcription start site region 119600	990 bp downstream
Tssr119601	transcription start site region 119601	957 bp downstream
Tssr119602	transcription start site region 119602	910 bp downstream
Tssr119603	transcription start site region 119603	183 bp downstream
Tssr122343	transcription start site region 122343	303 bp upstream