rs260374285 SNP Detail

Summary

• ID
  rs260374285
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60198405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTTTTACA ACAGTCTGGG AGAAAGCACA
  CAGGCAATGC TCTCTGGCTC AGTGCTGCAA TGCTAAGTGT TTAGGTCCAG ATGTCCTGCC
  TGGGTGAGCA GAGATCTGAG CCTAAGGGGT TCTTGCTGCA GAAAGAGGAC TGTTGAAAAC
  R
  GAAGTAAACA ATGTTGCCAC CAGACAGGGA TGTCTCCGTC AATTTTGGGA AAGCTGTGTA
  TAACAGAGCT CTGGAAAGAG TGAGGTGGGT CTCTGTGTAG GCAGAGATGT CCAAACTGTG
  CTTGGGTGCT GGGACAAGGT TCTCCTGTGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325153	CHEV_10_59825374	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260374285					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60198405 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Rr219879	regulatory region 219879	1996 bp proximal
Rr228092	regulatory region 228092	within coordinates
Tssr93624	transcription start site region 93624	1610 bp upstream
Vsir	V-set immunoregulatory receptor	within coordinates