rs260391512 SNP Detail

Summary

• ID
  rs260391512
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142216230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTTGGA GTACCTGAAT
  TTGGGGGGGC CCAGGAAGAT AATTTCTGAA TCTAAAGTTT CCTGGTCCTT CAGGGCCAGT
  CTCTACATTA CAAGGAATAG AGATTATGGG TTCCTAAATT ATGGGGCCTG AGAACCAATC
  CCCCAAATTT GCAATCTGCA GAGATTGTGC AAGATAGTGT GTGTGTGTGT GTGGGGGGGG
  K
  GTGTTTGAAA TGTAGGGGGG CTGAGTGGGT GTATAGCTGG TATTGCAGTG GGAGAAATCA
  GAACCTTTTT GTGACCCAAG GCTAACACTA AGTGTGTTTT GGGGGGCCTG GAAAATATTG
  CCTAATGTTT GAGGACACCA GGCATGAGCC AACACGGGGG ATGAAAAGGA TACAGGATGG
  TACTGGATTT TGCAATTGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373454651	MGP_WTSI_7_149848398	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	G	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260391512					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	G	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373454651	MGP_WTSI_7_149848398	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142216230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19968	CpG island 19968	1058 bp distal
Cpgi19969	CpG island 19969	1354 bp proximal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Igf2os	insulin-like growth factor 2, opposite strand	within coordinates
Rr316	regulatory region 316	1751 bp proximal
Rr658254	regulatory region 658254	1199 bp distal
Rr658255	regulatory region 658255	844 bp distal
Rr658256	regulatory region 658256	420 bp proximal
Tssr2464	transcription start site region 2464	1572 bp upstream
Tssr2465	transcription start site region 2465	1409 bp upstream
Tssr2466	transcription start site region 2466	1389 bp upstream
Tssr70251	transcription start site region 70251	1996 bp downstream
Tssr70252	transcription start site region 70252	1909 bp downstream
Tssr70253	transcription start site region 70253	1845 bp downstream
Tssr70254	transcription start site region 70254	1826 bp downstream
Tssr70255	transcription start site region 70255	1733 bp downstream
Tssr75890	transcription start site region 75890	1628 bp upstream
Tssr75891	transcription start site region 75891	1505 bp upstream
Tssr75892	transcription start site region 75892	1453 bp upstream
Tssr75893	transcription start site region 75893	1435 bp upstream
Tssr75894	transcription start site region 75894	1287 bp upstream
Tssr75895	transcription start site region 75895	1255 bp upstream
Tssr75896	transcription start site region 75896	1224 bp upstream
Tssr75897	transcription start site region 75897	1206 bp upstream
Tssr75898	transcription start site region 75898	1179 bp upstream
Tssr75899	transcription start site region 75899	636 bp upstream
Tssr75900	transcription start site region 75900	613 bp upstream