rs260394509 SNP Detail

Summary

• ID
  rs260394509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:111935751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCTAGGA CACATCTCTG
  CTAGCTTCAC CCAGCCTCCT CTTGTGTCTC CAGCTGTCGC TGGAGTCATG CACAGAGGGA
  TGCTCTGCAC TGAGTTCATT GCCAGGGCTC TAGCAGCCTC CTGGAGGCCA GCGAATATGT
  GCCTACAGCT GCAGAAGCCC CAGCTATGGC AGTCTGCCCC GGCTGGCGCG GGCTTCTCCC
  Y
  TCCTAAGCCT GCAGCTGCTC CCTCATACCA AACTCTATGA GGGCTTCTCA TAAGCATTGC
  AGTCTGGGGC AGCTCTAGGC AGGAGCAGAA TGGGTCTCCT CGGGGGTTCT TCAGGGAGCT
  GAAACTAAAG CACAGTATAG TCCAGCCAGG AGCTACATAA TCCCACTTGG CTCCAAAGAC
  ACACTTCTGT GTCATCCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322412421	CHEV_7_119480058	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260394509					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:111935751 () rs orientation: forward

Symbol	Name	Function Class
Mical2	microtubule associated monooxygenase, calponin and LIM domain containing 2	within coordinates
Tssr68564	transcription start site region 68564	49 bp upstream