rs260396096 SNP Detail

Summary

• ID
  rs260396096
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:46924040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAGGGGAA GGACTGGAGC
  TGGTGGGCGT GGCCTGAGAG GCACCGCGGG TCTGAGGGGC TTGGATCAGC CCAGATAGGG
  CGGGGCTTGG GAGGCGGGAA TGGCGCCGAT GGGGCGGGAC CTGAGAGGAG CGGTGGGTGT
  GATGGGGCGG GACAGCCTCG ACCTGTGCGA CAGGAGGGGA GGAGCTGGCG AGGGGGAGTG
  R
  GCGCGCTAAG AGATGGGGCG GGGAGGAGCC TGCGGACGGG GCGGGGCGGC GTGGCACGGC
  ACGCGCACTA CCAGCCGCCC GGCCCTGCTG CTGCTGCTGC AACGCCGGTG GCGCAGCCAA
  GAGAGCAGCT GCGGCCGCGA CTCCTTAAAT AGCATCGCAA CCCGGCGCGG GGCAGTTCGT
  GGATTGCAGT GACAGCCGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374534977	MGP_WTSI_8_47556357	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260396096					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374534977	MGP_WTSI_8_47556357	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:46924040 () rs orientation: forward

Symbol	Name	Function Class
Acsl1	acyl-CoA synthetase long-chain family member 1	174 bp upstream
Cpgi20317	CpG island 20317	within coordinates
Gm45244	predicted gene 45244	388 bp downstream
Gm64268	predicted gene, 64268	39 bp upstream
Rr186591	regulatory region 186591	within coordinates
Rr368530	regulatory region 368530	146 bp downstream
Tssr2561	transcription start site region 2561	708 bp upstream
Tssr77199	transcription start site region 77199	45 bp upstream
Tssr77200	transcription start site region 77200	78 bp upstream
Tssr77201	transcription start site region 77201	166 bp upstream
Tssr77202	transcription start site region 77202	690 bp upstream
Tssr77203	transcription start site region 77203	716 bp upstream
Tssr77204	transcription start site region 77204	884 bp upstream
Tssr77205	transcription start site region 77205	933 bp upstream
Tssr77206	transcription start site region 77206	1357 bp upstream
Tssr77207	transcription start site region 77207	1394 bp upstream
Tssr81204	transcription start site region 81204	603 bp downstream
Tssr81205	transcription start site region 81205	636 bp downstream
Tssr81206	transcription start site region 81206	1424 bp downstream