rs260402024 SNP Detail

Summary

• ID
  rs260402024
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69491457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCCCGCC TGAGTAGGAG
  CCGTTTGGAT GACAGGAGGG ACCAGGAAGA AGTTAAAAGT CTAAGCCTAC TAGAGAATTT
  TCTAGAAGAA TTAAAGACTT CTCTTCCAGT CATCCTTTGG AGTCACAGTT GGGGGAGAAG
  CAGGATGTAT CAGGAAGGAC GGAAAAGGCC ACAGAACCAA CTTGTACTGA GCTACAAATG
  R
  CAGCTTTTCA GAGGGAGAGG GATCAGGGAG AGGAGAGGGC AGAACTGCTG GAGGAACCAG
  AAGTCAAAGC CACCAAGATA CTGGCTATGG TGACAGAAGT GTGAAGAGAT GAAAGGAAAG
  TGGCTAGAAC CTTGTAAAAG GAAGAAGGAC AGTGTTCACC CCTGGGAAGC AAGTGGCTGA
  AACGGGTTCG AGGGATCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787296	MGP_WTSI_11_69414133	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260402024					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787296	MGP_WTSI_11_69414133	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69491457 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	within coordinates
Rr450033	regulatory region 450033	892 bp distal
Rr450034	regulatory region 450034	1021 bp distal
Rr450035	regulatory region 450035	within coordinates
Tssr3544	transcription start site region 3544	64 bp downstream
Tssr102487	transcription start site region 102487	591 bp downstream
Tssr102488	transcription start site region 102488	532 bp upstream
Tssr102489	transcription start site region 102489	607 bp upstream
Tssr108712	transcription start site region 108712	613 bp upstream
Tssr108713	transcription start site region 108713	462 bp upstream
Tssr108714	transcription start site region 108714	394 bp upstream
Tssr108715	transcription start site region 108715	360 bp upstream
Tssr108716	transcription start site region 108716	56 bp upstream
Tssr108717	transcription start site region 108717	42 bp upstream
Tssr108718	transcription start site region 108718	12 bp downstream
Tssr108719	transcription start site region 108719	23 bp downstream
Tssr108720	transcription start site region 108720	27 bp downstream
Tssr108721	transcription start site region 108721	41 bp downstream
Tssr108722	transcription start site region 108722	122 bp downstream
Tssr108723	transcription start site region 108723	150 bp downstream
Tssr108724	transcription start site region 108724	203 bp downstream
Tssr108725	transcription start site region 108725	227 bp downstream
Tssr108726	transcription start site region 108726	322 bp downstream
Tssr108727	transcription start site region 108727	344 bp downstream
Tssr108728	transcription start site region 108728	388 bp downstream
Tssr108729	transcription start site region 108729	475 bp downstream
Tssr108730	transcription start site region 108730	507 bp downstream
Tssr108731	transcription start site region 108731	538 bp downstream
Tssr108732	transcription start site region 108732	599 bp downstream
Tssr108733	transcription start site region 108733	1821 bp downstream