rs260402127 SNP Detail

Summary

• ID
  rs260402127
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13839070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAACAGCA GGCCAGGCAG
  GTGAGACGTG TGGGGAAGAT GAAGATGAGG AGGGGGGAGA CAGGAGCCCA ATGTCCCACT
  GGGCATCTGG CTTTGGAATG GCTAGTACTG GTTTACACTT TGTGCACAGT GGCTTGCAAG
  AGACAAATCT TGGGCCTATT AGAGAGAAAG CAGTGATTGA TGTATAGAAA GGTAGTGAAC
  R
  TTGTCCCAGT TGACATTCCA TAGTTATTGG TGGTTTGCCT GCCTTAAAGG AGAACTATGG
  TTCAGTTCTT GGGCCAGGAA TTCCGGAGGC TAACTTCTGC CCTTCCCACA GGGTCACCTG
  TTAGCTGGTA TTAGCATTGA TACATGTTTT CAACAGTTGT CCCTTCAACA ATTCAGTCCA
  CAGTTTCTTC CTTGAAGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379498329	MGP_WTSI_10_13683132	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260402127					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379498329	MGP_WTSI_10_13683132	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13839070 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1318	CpG island 1318	1217 bp proximal
Gm56954	predicted gene, 56954	742 bp downstream
Gm66890	predicted gene, 66890	1294 bp upstream
Rr384171	regulatory region 384171	738 bp upstream
Rr427854	regulatory region 427854	804 bp proximal
Rr427855	regulatory region 427855	1305 bp proximal
Tssr92402	transcription start site region 92402	1300 bp upstream
Tssr92403	transcription start site region 92403	1470 bp upstream
Tssr92404	transcription start site region 92404	1501 bp upstream
Tssr92405	transcription start site region 92405	1523 bp upstream
Tssr92406	transcription start site region 92406	1688 bp upstream
Tssr92407	transcription start site region 92407	1913 bp upstream
Tssr92408	transcription start site region 92408	1932 bp upstream
Tssr92409	transcription start site region 92409	1964 bp upstream