rs260413755 SNP Detail

Summary

• ID
  rs260413755
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172155138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTTTCCC TGGCAATTAT
  CCCTTCCCCC AGCACTCTTC AGCATCCTGC CAGAAGCCCC ACCTGAAGAC TGTTCCCTCG
  GTGTTCTCCC TGGCCTCACT CTTTCTCCTG CTACATTTCC CCTCCACCCC AGACTTCCCA
  AGGAGAAAGC AATGCAGACT GTGCACAAAA ACCTCCAGTG TGCAAAGGTT GGATGTCCTC
  R
  GCATTGGGAA CTTCCCACTG GCAATTCTAA CTGCTTCACC GTGGTCACTG ATGCTCTGAT
  ACCAGCCCAT TTCCTGCCAG GGCTCTTTCC CACAGGAGAC ACGCTGAAAA GGGTTGGCAA
  TAGGAGATTG GGGGCCATGC GTGAGGTCAA CTGCCCACGG CAAGGATGAC GAGTGAGGTC
  AACTGCCCAC GGCAAGGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352403547	MGP_WTSI_1_174257702	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260413755					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352403547	MGP_WTSI_1_174257702	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172155138 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	616 bp distal
Gm70847	predicted gene, 70847	645 bp downstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423527	regulatory region 423527	1281 bp distal
Rr423528	regulatory region 423528	1653 bp distal
Rr423529	regulatory region 423529	1238 bp distal
Rr423530	regulatory region 423530	711 bp distal
Rr423531	regulatory region 423531	647 bp proximal
Rr423532	regulatory region 423532	1701 bp proximal
Tssr15210	transcription start site region 15210	1346 bp upstream
Tssr15211	transcription start site region 15211	1333 bp upstream
Tssr15212	transcription start site region 15212	1316 bp upstream
Tssr15213	transcription start site region 15213	1690 bp downstream
Tssr15214	transcription start site region 15214	1746 bp downstream