rs260414562 SNP Detail

Summary

• ID
  rs260414562
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172524913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCATCTA ACTAAAAATG
  GAATTACTGA ATGAATGGTT CTCTGCTTCA GGGGATACAC TATTTTTCTC TAATTTCTCA
  ATTAGAGGGC AACTCATGAA TGGAATGAAA GAATGGATGA GCTTGTGCGG GGTTCAGAAG
  CAAGGCCAAG GAGCATGGTA TTCAACTAGA AGACTGAGGT AAGCAGAGAA CTGCTTAACT
  S
  TTGCTAGGCA GTGTGGAGGG ACTTCTTAGA CTCTGAACAA AAGAAGCAAA TGCTGACTAT
  CCTGCCTCCT CCCTGAAGCT TCCACATTAT AAAAAAGAAA CAAAAAAACA AAAAAACCCC
  CCAAAAACCC CCAAAACCCA AAACCCCCAA ACCAAAAAAA ACCCAAAACA TCAAACAAAC
  AAAACCCAGT CTGTTACACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352411473	MGP_WTSI_1_174627477	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260414562					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352411473	MGP_WTSI_1_174627477	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172524913 () rs orientation: forward

Symbol	Name	Function Class
Crp	C-reactive protein, pentraxin-related	710 bp upstream
D1Mit149	DNA segment, Chr 1, Massachusetts Institute of Technology 149	1883 bp proximal
D1Mit149.1	DNA segment, Chr 1, Massachusetts Institute of Technology 149.1	1731 bp proximal
Rr423653	regulatory region 423653	180 bp proximal
Rr423654	regulatory region 423654	548 bp proximal
Tssr10246	transcription start site region 10246	700 bp upstream
Tssr10247	transcription start site region 10247	1643 bp upstream
Tssr10248	transcription start site region 10248	1709 bp upstream
Tssr10249	transcription start site region 10249	1733 bp upstream
Tssr10250	transcription start site region 10250	1788 bp upstream
Tssr10251	transcription start site region 10251	1844 bp upstream
Tssr10252	transcription start site region 10252	1910 bp upstream
Tssr10253	transcription start site region 10253	1959 bp upstream