rs260418371 SNP Detail

Summary

• ID
  rs260418371
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129445623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAAAGTG CTAGAGGGCA
  GGCGAGGAAG CACAGGTGAC ATAGTGACCC AATGGAGGGG TGGCCTGCTG CTGTGGTAGG
  GGTTAGGAAG GGGGTAGCCT AGTGCTGTGG TAGTGGCTAG GGAGGGGGTG GCCTGCTGCT
  GCTGCTGTGG TGGTGGCTAG GGAGGGGTGG CCTGATGCTG TGGTGGTGGC TAGGGAGGGG
  G
  TAGCCTGATG CTGTGGTGGT GGCTAGGGAG GGGTGGCCTG CTGCTGTGCT GAGGGTGAGG
  GTTATTGGGG TTCTTGGGAT GAGGAGCTCT GACTGTTGCT ATGGTTTCTT CCAGGGATGA
  GGCTTTGGGA GATCTCACAT CCTGGGTCAC TAGGCCCCGC CTTCCTCCTC AGCTTCATTT
  CTGAATTGAG TTGGTTTTCT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	LEWES/EiJ
ss355642721	MGP_WTSI_2_129429439	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	LEWES/EiJ
rs260418371					SNP	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355642721	MGP_WTSI_2_129429439	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129445623 () rs orientation: forward

Symbol	Name	Function Class
Rr564956	regulatory region 564956	within coordinates
Rr564957	regulatory region 564957	366 bp proximal
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20145	transcription start site region 20145	1486 bp downstream
Tssr20146	transcription start site region 20146	27 bp upstream