rs260418787 SNP Detail

Summary

• ID
  rs260418787
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7351738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAATGAAT GAACGAATGA
  ATGAATGAAT AAAATCATTT CCAACTCCTA GATCTACATT CTAATTTTAC TGTTAATCAG
  GTTTCCTAGA ACATAGGAAA TGTTTAGGAA GCATCTTTTA CTAAACTCAG GTGTCATAAA
  CAGTGAGAAA TGTAGTGTAC CCTGTGTTTT CCTCATCCAG TGGCACAGAA ACCACTGTGT
  R
  CTTCACAAGT GAGTAAACAG AATCCACAAG GTGAACCAAA CAAATTAGGT GGTTGAACCA
  AGATTCATAT CCCAGCTGCT TGGCTCTAAC TACACATTAT TAAAAGTAAA GTGGGACCTT
  TAATCTTATT TAGAATCACA GGTAGAAACA TTCACACCAG AATACATTTC ATTTGTCTGC
  CAATGAAATG TTCCATAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560294	MGP_WTSI_9_7351738	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260418787					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560294	MGP_WTSI_9_7351738	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7351738 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	1805 bp upstream
Tssr83704	transcription start site region 83704	1973 bp downstream
Tssr83705	transcription start site region 83705	1711 bp downstream
Tssr83706	transcription start site region 83706	1684 bp downstream
Tssr83707	transcription start site region 83707	1662 bp downstream
Tssr83708	transcription start site region 83708	1644 bp downstream
Tssr83709	transcription start site region 83709	1621 bp downstream
Tssr83710	transcription start site region 83710	1104 bp downstream
Tssr83711	transcription start site region 83711	622 bp downstream
Tssr83712	transcription start site region 83712	235 bp upstream
Tssr83713	transcription start site region 83713	637 bp upstream
Tssr83714	transcription start site region 83714	809 bp upstream
Tssr83715	transcription start site region 83715	861 bp upstream
Tssr83716	transcription start site region 83716	1132 bp upstream
Tssr83717	transcription start site region 83717	1173 bp upstream
Tssr83718	transcription start site region 83718	1193 bp upstream
Tssr83719	transcription start site region 83719	1219 bp upstream
Tssr83720	transcription start site region 83720	1248 bp upstream
Tssr83721	transcription start site region 83721	1500 bp upstream
Tssr83722	transcription start site region 83722	1702 bp upstream
Tssr83723	transcription start site region 83723	1826 bp upstream
Tssr88066	transcription start site region 88066	1615 bp upstream
Tssr88067	transcription start site region 88067	1242 bp downstream
Tssr88068	transcription start site region 88068	1290 bp downstream
Tssr88069	transcription start site region 88069	1737 bp downstream