rs260423160 SNP Detail

Summary

• ID
  rs260423160
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:12441739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAGATCA AGCAGTATGG
  TTTCACGTTC ATGTGTCAAA AATGTAACTC CTTCCTCTCT CTGGACAGTC TTTCCCCTTG
  TCTTCTTACC ACAGCTGAGG GTGCACAGGA ATACACACAA ACCCCTTGGA CTGTAGCAAG
  AAGCTTTTAT CTGCCTAGGG GTGAAAAATG CGCAAGTCAC AGTGAGCCTG CACTTACATA
  S
  TACTTCCTCC CTAAAACTAA AGCTATTGGG AAAGCGCTGT CTTCTGTCTG TTAGGATTTG
  CCTTTTCGCG CTGCTTGGAA GAGGGGTGGG GTAATTTAAA ACAAAACAAA ATTTATGTCA
  CAGTTAGCTG GGAAAAGGCC ATGATATGTA TTTCAGTTCC AGGATGGCTT CCATGGGTTA
  TCTGGAAGGC CTCGTGATTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401772536	MGP_WTSI_19_12538865	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260423160					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401772536	MGP_WTSI_19_12538865	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:12441739 () rs orientation: forward

Symbol	Name	Function Class
Dtx4	deltex 4, E3 ubiquitin ligase	1963 bp downstream
Mpeg1	macrophage expressed gene 1	within coordinates
Rr356716	regulatory region 356716	1662 bp proximal
Rr362996	regulatory region 362996	538 bp distal
Tssr155326	transcription start site region 155326	432 bp upstream
Tssr155327	transcription start site region 155327	527 bp upstream
Tssr155328	transcription start site region 155328	562 bp upstream
Tssr155329	transcription start site region 155329	1366 bp upstream
Tssr155330	transcription start site region 155330	1429 bp upstream
Tssr155331	transcription start site region 155331	1466 bp upstream
Tssr155332	transcription start site region 155332	1483 bp upstream
Tssr158414	transcription start site region 158414	566 bp upstream
Tssr158415	transcription start site region 158415	521 bp upstream
Tssr158416	transcription start site region 158416	77 bp upstream
Tssr158417	transcription start site region 158417	898 bp downstream