rs260427222 SNP Detail

Summary

• ID
  rs260427222
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23587350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGAATCC AGGAAAGGTG
  ATAACATTTG AGATGTAAAT AGAGAAAATA TCTAATGTAG CTGCCAGCGG CCACAGGTCA
  CTGGGTTCCT GAAAGGAAAG CTGGGGATGG ATGGGAAGGA TGGCGAGAGA AATAATGAGC
  CAAGACATAG TTCTCTGATC AAGGCTCAAT GTTTTAATTC TAAGGTCTGA ATTTAAAGGG
  C
  GGGGGTGGGG AGCCTATCCC CTACTTTGCC AGAATCTCAT CTGGAAGGAA AACTCAGCTG
  CTCAGCAAGT AGTGGCTTCT TACAGGAAGC TGCAGATGCG GCATACAATA GACTCCACCA
  AGGTCAGAAG ACTCCACCCT CTAGGTGGGC TGCTCAAGGC TGGGGGGCAG GTACAATCTA
  ATTAAAAAAA GTTTGAAAAT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	PWK/PhJ
ss364263998	MGP_WTSI_5_22888170	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	PWK/PhJ
rs260427222					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364263998	MGP_WTSI_5_22888170	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23587350 () rs orientation: forward

Symbol	Name	Function Class
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates