rs260431979 SNP Detail

Summary

• ID
  rs260431979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40369467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAGATGC GCTGTTGATA
  TAAGGGATCA GAGTCTCTCT TGCTCAAGGA AAACAGGGCA TTACCAGTTA TTCTTTGAAG
  AAAGAAAAGG TACAACACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC
  ACACTTGCCA TAGGCCTTCT CAATTTAAAT TCATAGCCTC AAAATGAAGA TGAACCACCA
  R
  CTTCTTCCTC CAGTGCACTT CAGACAGGTG TCCCGCCCAC GAGTCTGGAC CTAAAATCCT
  CTAATATTTA ATCTAAGCTT CAGGCACAGA AGTGGTGGAG AATTACTGCT TACATTTCCT
  CTGGTCTAAG GTAAAACCTC GGCTGGACCA AATCTAAAAG GTTCTCACAT GCAGATTCCA
  GGAGCATCCC TCATCCCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377313646	MGP_WTSI_9_40265756	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260431979					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377313646	MGP_WTSI_9_40265756	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40369467 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	1804 bp distal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676840	regulatory region 676840	1917 bp distal
Rr676842	regulatory region 676842	510 bp proximal
Rr676843	regulatory region 676843	881 bp proximal
Tssr84451	transcription start site region 84451	513 bp downstream
Tssr84452	transcription start site region 84452	458 bp downstream
Tssr84453	transcription start site region 84453	253 bp upstream
Tssr88943	transcription start site region 88943	1995 bp upstream
Tssr88944	transcription start site region 88944	1947 bp upstream
Tssr88945	transcription start site region 88945	1930 bp upstream
Tssr88946	transcription start site region 88946	1834 bp upstream
Tssr88947	transcription start site region 88947	1805 bp upstream
Tssr88948	transcription start site region 88948	1775 bp upstream
Tssr88949	transcription start site region 88949	686 bp upstream