rs260440964 SNP Detail

Summary

• ID
  rs260440964
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173919416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGCCTTC TCACTTCCTG
  GGCCTCCTGG TCCTCCTCCC CCACCATCCG TCGGGCAGCC TCGATTTACA TATGTTTTAA
  CACGAGGACT TGGAACCTAG GCCTTTCTCC AACCTTCTTT TTGTTTTGTT CTGTTCTGTT
  TGGCACTCCC CCCCCCCCCC CCTGCAATGG CCTCACTTTG GTTCTGTGGG CCAGGTGGGT
  R
  GTTAGCTGAC TCAAATCCTT GCAGACCCCC CCCCCCCAGG AAGGAGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGGTCTGC TCAGCTCAGC TCATTTTCTT TCCCACTATT
  TTTCTTCCAA TGGCCCTAGT TCTCGGTGTG GCCATGTACA CTAGGAGTAA TTGCTTTGCT
  GCCCCCCCCC CCCGCCCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356682635	MGP_WTSI_2_173903124	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260440964					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356682635	MGP_WTSI_2_173903124	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173919416 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12852	CpG island 12852	380 bp distal
D130084N16Rik	RIKEN cDNA D130084N16 gene	within coordinates
Rr397552	regulatory region 397552	within coordinates
Rr572063	regulatory region 572063	1356 bp distal
Rr572064	regulatory region 572064	691 bp distal
Rr572065	regulatory region 572065	within coordinates
Rr572066	regulatory region 572066	530 bp proximal
Stx16	syntaxin 16	within coordinates
Tssr22077	transcription start site region 22077	1267 bp downstream
Tssr22078	transcription start site region 22078	564 bp downstream