rs260441205 SNP Detail

Summary

• ID
  rs260441205
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139338042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGTCCTT GTGGTGAGAG
  AGGTCCTTGA TGGCTGCACA GGGCATTCAG TGTACCTGCT GGGCACTAGG GTCCTGAGGA
  CACAGGGGAC CCTCATCCTT TCTTTCAGGA TGAGGGTCTA GTCTCAGAGT CCCGTAAGTT
  CTACTTTGAC GGGAGGCCAC GGAGAACTAT TGGTTCCCAA AGTGGGGGAC AGAATAGACA
  Y
  GGCTCTGACT GTGACACTGG AACCTGAGGA GACATGGAGG GATGGATGTA GGTATCTTGG
  AAGCCTGACC TCGCCTGGCC CAGGCTTGGA TAACCTGTGA CCAAAACGTC TTGGCTCTGT
  ACTGCCGACA GAGGTCCTTT CAGCCCCCAA CCCAGGCCCC CTGCCACAGA GGAGACCCCA
  CATTCCACAT AACCTGTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321704304	CHEV_5_139828241	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260441205					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139338042 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	330 bp upstream
Rr623254	regulatory region 623254	880 bp distal
Rr623255	regulatory region 623255	379 bp distal
Rr623256	regulatory region 623256	within coordinates
Rr623257	regulatory region 623257	1409 bp proximal
Tssr49499	transcription start site region 49499	320 bp upstream
Tssr49500	transcription start site region 49500	1922 bp upstream
Tssr49501	transcription start site region 49501	1954 bp upstream