rs260443261 SNP Detail

Summary

• ID
  rs260443261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10653581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATGACAG CAACACCTAT
  CCCCGCTTTC TAAGATGTAG GTTCCAGCCG GGCCTGGAGG TACACATCTT CCATCCCAAT
  ACTAGGAGTC TGAGGCAGGA GGATGGCAAA GTTCAAAGCC TGACTGAGCT ACGAAGTGAG
  TTTAAGGCCA ACGTAAGGCA ACTCAGTGAG AGCCTGTCTC AGAACAAAAA GTAAAGAGGG
  Y
  CTGGGGTGGG AGCACTTCCT AACATTGATG AGTCCTTGGG TTTAACCCAG ACAGCGAGAA
  TAGTAAACAA GTACATCTAC TAAAACGCCT GTAGGTTCCC GAGGCTATCC CACCTTCCCA
  GTTTTGAGCC TTGCAATTCT GTGTCACAGT TCTATCCCTG TAGATGTTTT TCTCATTTTT
  CCCCGTATGT TTTGAAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395387224	MGP_WTSI_16_10835810	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260443261					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395387224	MGP_WTSI_16_10835810	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10653581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7956	CpG island 7956	67 bp distal
Gm17913	predicted gene, 17913	601 bp upstream
Gm26822	predicted gene, 26822	within coordinates
Rmi2	RecQ mediated genome instability 2	within coordinates
Rr370049	regulatory region 370049	774 bp upstream
Rr404679	regulatory region 404679	570 bp downstream
Rr511605	regulatory region 511605	648 bp distal
Tssr137059	transcription start site region 137059	633 bp downstream
Tssr137060	transcription start site region 137060	624 bp downstream
Tssr137061	transcription start site region 137061	213 bp downstream
Tssr137062	transcription start site region 137062	183 bp downstream
Tssr139967	transcription start site region 139967	348 bp upstream
Tssr139968	transcription start site region 139968	789 bp downstream