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rs260445367 SNP Detail
Summary
  • ID
    rs260445367
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:131196142 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCGCCCGCA TAGGTAGCCG
    CTCCGCCCCA GGCCGCAGTC CGGGCGCCGC AGCGGGCCGG GCTCCGGGCG GCTCCGGCGG
    CGCCGAGGGC GGGGTCTCCG GCCGGCGGAG CCCGGGGCAG CGCGCAGCTC TGTTTACCGC
    GGGCCCGCCC TCCTCCCCAG CCCGCGCCCT GACATCATTC ATTCTCGCAC TCTCGCCAGC
    Y
    CTCTCCTGCT CCCAGCCGTG ACTCACCCCG GGCCCGAGGC TCCCGCGGGC TCCCGCGACT
    CCCGGCGACC GAGTCTCTCC GGACGCCTAG CCGAGCTCGA AAAACCGGTG CGACTTCTTC
    GGGGAGGCGA TCCCAGCTGG CCGACCGACC CTCCCTCCCC TCTGCGGCCC TACAAGATGC
    GGCGAAGGAG GGGCTTGGCA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss359739305 MGP_WTSI_3_131153345 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260445367 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss359739305 MGP_WTSI_3_131153345 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:131196142 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13839 CpG island 13839 within coordinates
Gm36753 predicted gene, 36753 within coordinates
Rr585350 regulatory region 585350 1490 bp distal
Rr585351 regulatory region 585351 within coordinates
Rr585352 regulatory region 585352 24 bp proximal
Rr585353 regulatory region 585353 284 bp proximal
Sgms2 sphingomyelin synthase 2 within coordinates
Tssr1055 transcription start site region 1055 652 bp downstream
Tssr1056 transcription start site region 1056 350 bp downstream
Tssr31735 transcription start site region 31735 628 bp downstream
Tssr31736 transcription start site region 31736 within coordinates
Tssr31737 transcription start site region 31737 1178 bp upstream
Tssr35707 transcription start site region 35707 1360 bp upstream
Tssr35708 transcription start site region 35708 1331 bp upstream
Tssr35709 transcription start site region 35709 624 bp upstream
Tssr35710 transcription start site region 35710 607 bp upstream
Tssr35711 transcription start site region 35711 445 bp upstream
Tssr35712 transcription start site region 35712 415 bp upstream
Tssr35713 transcription start site region 35713 146 bp upstream
Tssr35714 transcription start site region 35714 71 bp downstream
Tssr35715 transcription start site region 35715 129 bp downstream
Tssr35716 transcription start site region 35716 272 bp downstream
Tssr35717 transcription start site region 35717 348 bp downstream
Tssr35718 transcription start site region 35718 366 bp downstream
Tssr35719 transcription start site region 35719 609 bp downstream
Tssr35720 transcription start site region 35720 672 bp downstream
Tssr35721 transcription start site region 35721 894 bp downstream
Tssr35722 transcription start site region 35722 946 bp downstream
Tssr35723 transcription start site region 35723 1005 bp downstream
Tssr35724 transcription start site region 35724 1018 bp downstream
Tssr35725 transcription start site region 35725 1056 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory