rs260452901 SNP Detail

Summary

• ID
  rs260452901
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127127644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGTGTAA CCATTGCGTC
  AGGCCAGCCC ACTGTTTGTC TCTGCACCCT CAGGCCTGGG GCTCCTCTGC TGATGAAAGC
  CAGGTCCCAC ACACTGGAAG ACCAAGGGAG TTTTCCCTAG AGGACAACCC TGCAGAGAAA
  CACTCAGGGC AATATTGCAT CTGCAGTCCC CAGAGACAGC CAGCTCCGCT CTGCCTTTAG
  R
  CTCAGTGGGC TTAATTCTCT ATAAGGGAAC TTGGGGGAGG GGCTTTTTCC CCATTCATTC
  CTAACAAATG CCTAATAAGC ACCCACTATG TACCAAGTAT CTGGGGACCC AGGGTATATT
  AGGAGCAAAA GATAAAACTG TTCTCAATAA AACTTACATT TCAGTATAAA GCAAAAGGGA
  AAAAAAAAAC AAAAGCAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382182468	MGP_WTSI_10_126728831	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260452901					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382182468	MGP_WTSI_10_126728831	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127127644 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2350	CpG island 2350	552 bp distal
Ddit3	DNA-damage inducible transcript 3	within coordinates
Gm4189	predicted gene 4189	within coordinates
Gm20492	predicted gene 20492	1936 bp downstream
Gm66222	predicted gene, 66222	1262 bp downstream
Rr369092	regulatory region 369092	1006 bp downstream
Rr402324	regulatory region 402324	142 bp downstream
Rr440866	regulatory region 440866	1756 bp distal
Rr440867	regulatory region 440867	936 bp distal
Rr440868	regulatory region 440868	1135 bp distal
Rr440869	regulatory region 440869	within coordinates
Rr440870	regulatory region 440870	1233 bp proximal
Tssr96179	transcription start site region 96179	1761 bp downstream
Tssr96180	transcription start site region 96180	972 bp downstream
Tssr99764	transcription start site region 99764	1415 bp upstream