rs260453215 SNP Detail

Summary

• ID
  rs260453215
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:84071194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TACTTGCGG GTCTGATTCT TTGCGTCGGT
  TCCTGGGCTC CGAGAGGGAG AAGACCACGT GGGAGGCGGG TGTTGAGGGT TGGGTCTGGT
  TGCACGGAAA GTCTCGGTCC TCTCTTGCGG AGAGAGGTGT GGGGCGCAGA GGCGCGGGCT
  K
  CTGTGGTACT CACTGTGCCT TTGTATCGCG GGGAGAGCCC GGGCCAGGCG GGCTGTCCCT
  TTGCCAGTTC CTGCTCGCAG GATTTGAGGG TTTCTATGAG GGACGTAAGT AGTAAAAGCG
  TGCTCACTAG TTCTTAACTC TCCCTTTGGC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323769375	CHEV_11_83993870	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260453215					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:84071194 () rs orientation: forward

Symbol	Name	Function Class
Acaca	acetyl-Coenzyme A carboxylase alpha	within coordinates
Cpgi3430	CpG island 3430	within coordinates
Rr453130	regulatory region 453130	within coordinates
Rr453131	regulatory region 453131	918 bp distal
Rr453132	regulatory region 453132	371 bp distal
Tssr103798	transcription start site region 103798	711 bp downstream
Tssr103799	transcription start site region 103799	681 bp downstream
Tssr103800	transcription start site region 103800	519 bp downstream
Tssr103801	transcription start site region 103801	505 bp downstream
Tssr103802	transcription start site region 103802	491 bp downstream
Tssr103803	transcription start site region 103803	8 bp downstream