rs260453636 SNP Detail

Summary

• ID
  rs260453636
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115568341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTATGAG TACAGGTGTT
  TTTGCCTCTC TCTCTCTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTATGCGCA
  CCATGTATGT GTACTACCCC CAGAGCCCAG AGGAGACAGT TGGCTTCCCT AGAACTGGAG
  TGACGGATAA TCAAGAGACA CCGTGTAGGT TCTGGGAACC GAACCTCCGT CTTCTGGGAT
  W
  GCAAATAGCA GAGCTCTCCC TCCAGCCCTA ACACTTGCCT CTTTTTGTTG AGTTTTCACA
  TTTAACATTA AGTTAAGTTT GCACTTTCAG GGAAAAAAAA AGCGAATGAC TTTTTATTGG
  AATTGTATTA ACTTGTATGT TTTAAGACTG GAAGAGGCTC TCTGCTGGCT CATGTCTGTG
  ATCTTAGCAT TCAAGAGGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369755999	MGP_WTSI_6_115541398	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	T	A	A	T	A	T	T	T	A	A	T	T	T	T	T	A	T	T	T	T	T	A	A	T	T	A	T	T	T	T	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260453636					SNP	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	T	A	A	T	A	T	T	T	A	A	T	T	T	T	T	A	T	T	T	T	T	A	A	T	T	A	T	T	T	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369755999	MGP_WTSI_6_115541398	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115568341 () rs orientation: forward

Symbol	Name	Function Class
Mkrn2os	makorin, ring finger protein 2, opposite strand	within coordinates
Tssr62513	transcription start site region 62513	1113 bp downstream
Tssr62514	transcription start site region 62514	1130 bp downstream
Tssr62515	transcription start site region 62515	1150 bp downstream
Tssr62516	transcription start site region 62516	1163 bp downstream
Tssr62517	transcription start site region 62517	1191 bp downstream