rs260465581 SNP Detail

Summary

• ID
  rs260465581
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66135660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGGGCAC GGTCCCATCG
  CTCTGCACCA GATGCGGCCC CTTAAAGCTG TATTTGTACT CGAAACGGCG GTGTGGCAAC
  TCGGCCTGGG TGCCCGCGGC GCCGGGAGCC GCAGCGTCGC CTCCCGTGCC GTCGCTCCCG
  GTGAATTGGC TGAAAGACAG CAGCAGGGCG CAGAAGAACG ACCGCGCTCC AGCCTGGGGA
  M
  CCCTCCGCCT GGACACCGCC ATCTTGGATT CTGGGACGCA GAGGCCGGCG GGAGAGGGAG
  GGGCTCTGGA GCCGCGGATG GCCAACAGGG CGCTCACTGA TTGGTGGAGC CCGAGAGACC
  CGCGGGCCAG GGATGAGCCC CGCCCCTGGC CTCCTCGCTA CTGGGGGCCA CTAGGACTGT
  GAGCATCTGT GGGCGGGGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325658937	CHEV_18_66162243	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260465581					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66135660 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10156	CpG island 10156	within coordinates
Lman1	lectin, mannose-binding, 1	within coordinates
Rr353056	regulatory region 353056	within coordinates
Rr355117	regulatory region 355117	1342 bp proximal
Rr405704	regulatory region 405704	within coordinates
Tssr153727	transcription start site region 153727	23 bp downstream