rs260468329 SNP Detail

Summary

• ID
  rs260468329
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46116704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTATATA ACCAGCTTCC
  GACTGGCTTC TTTTTTTTTT TTTCCGCCCT TACTACTCTT CAGCAATTTC CCAACCTTCC
  CCAAGTATTT ATATTGCCCT CTTATCTGTA GGATTATACA GCAAGAAAGC AAAACAAAAC
  AGGACAGCCA CGGGATCGAA CTAAACCCCA TCCTCTTACC CCTGATCCTC CCCCCACCCC
  A
  CCCCCCGCGC CCCTGGCAGA GTCTAGATAC AGCACCCTAC TTCCACCCCC CACCACTAAG
  GTCCTTGCTC AATCTCCCTA GAAAACCTGA ATTGTTTCAC CTCTTGCAGT CAGCTCTCTA
  CGTGGTCTGA AATAAAATGA AAGCGCACAA GCCACAGAGT TGAAGGAGGC GGCTCAAGAG
  AGGTCGAAGC GCTGCAGAGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	NON/ShiLtJ	RIIIS/J	SWR/J
ss388491968	MGP_WTSI_13_46058597	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	NON/ShiLtJ	RIIIS/J	SWR/J
rs260468329					SNP	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388491968	MGP_WTSI_13_46058597	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46116704 () rs orientation: forward

Symbol	Name	Function Class
5033430I15Rik	RIKEN cDNA 5033430I15 gene	1996 bp upstream
Atxn1	ataxin 1	within coordinates
Cpgi5536	CpG island 5536	16 bp proximal
Rr403752	regulatory region 403752	1671 bp upstream
Rr478835	regulatory region 478835	1719 bp proximal
Tssr119584	transcription start site region 119584	1983 bp upstream
Tssr122339	transcription start site region 122339	467 bp downstream
Tssr122340	transcription start site region 122340	1736 bp downstream