rs260478102 SNP Detail

Summary

• ID
  rs260478102
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61927968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTACAGTC TGCCATGGGC
  GATTGTCTCT GGTGCAGCTG ACCAGTCTCC CTGTCTCAAT AAATCTGCTT AAAACTGTTT
  GTAGCAACAA AGTTATAAAG TGCAGCCATT GCTGTAGCTG TTTTTTTCTT TTCTTTTCTT
  TTCTTTTCTT TTCTTTTCTT TTCTTTTCTT TTCTTTCTTT TTTAATAGTA AAAGAGCGCT
  M
  TGCTCTTATT TGTCTGGCCT GGTCATGCCA GGCTGTGTGA GCACCCTCAT AGGGCGGGTG
  GGAGGTCTCA TCATTGGAGG CCCCGGGCAT CATGGGCAAG TGGCCTCCTG TGGGTGGTCT
  TATCCCAGGA GCTGGTCCCA CAGGCATCAT GGCATCTAGG AGGAGGAGGG CCCATCATTG
  GCATCATGGG AGGTCCTCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325645786	CHEV_18_61954551	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260478102					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61927968 () rs orientation: forward

Symbol	Name	Function Class
Gm35919	predicted gene, 35919	within coordinates
Rr346544	regulatory region 346544	1768 bp distal
Rr346545	regulatory region 346545	568 bp distal
Rr351728	regulatory region 351728	1823 bp distal
Rr356351	regulatory region 356351	760 bp distal