rs260486130 SNP Detail

Summary

• ID
  rs260486130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97023296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGTAGCC CCAAGCCTTT
  CTCAGGGTGA GCTTTTAAGC ACATAAACTA TGTCCTGGGT TGACATACTT CAGTTAACAA
  GAATAGTTAG CCAGATGCAG AACTATGGAA GCCAGAAGGC AAGGTTAGTA CATTTAGAGG
  CTTTCCCAGG ACTATGGACT TTGATGGATT AAGTCTTTGT TTTAGTTCTA GCCTGTGGTG
  Y
  TTTCTACATT CCCAGTTTTA TGGCCTGAAT GGTACTTATT GATAGATGAT TTCTCCTCGG
  GTGAAATGGG CCAATTCAAG ACAGATTAGA TTATATCAAA GGCAGGTTTA TTGGGAATCT
  GCTCTCAGGT GAGTTCACTG GCCCCAAGGA TTGAGGCCAG GGGAGTTGCC ATGGGGAGAG
  AAGGGGAGGG AGAGAGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323116080	CHEV_9_97041662	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260486130					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97023296 () rs orientation: forward

Symbol	Name	Function Class
Gm57041	predicted gene, 57041	within coordinates
Rr685156	regulatory region 685156	282 bp distal
Tssr86631	transcription start site region 86631	104 bp downstream