rs260487471 SNP Detail

Summary

• ID
  rs260487471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:115052071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGAGCTGG TTGTGACCCC ATCACCAATC
  CTCACTAAGG GGGTGAAGGA GACCCCAGAC TTCTCCTCTC CCAGCTCCCA GAAAGATAAT
  AAGGGCCCTC ATGCAGGGAG CTAGCCCAAA GCCTTGGGCA AGATAAACAT GGAGATTGTC
  Y
  TAAGAGGAAT AGCAATTACT AGGTACTGAG TCTGCTTGGC TACCTCTGGC TTTCCCAACC
  CTCCTTCTGG AAGCGTGCAC GGGCTTTTTC TTCAGCACAC ACGAGCAGTG GGGCACCTGA
  AAACACTCCT TCCTGATCTC TGGACCTCAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323861540	CHEV_11_115022559	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260487471					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115052071 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4109	CpG island 4109	1675 bp proximal
Gm72084	predicted gene, 72084	1000 bp downstream
Rab37	RAB37, member RAS oncogene family	mRNA-UTR
Rr369433	regulatory region 369433	1598 bp upstream
Rr403111	regulatory region 403111	1817 bp upstream
Rr459780	regulatory region 459780	1031 bp distal
Rr459781	regulatory region 459781	165 bp distal
Rr459782	regulatory region 459782	212 bp proximal
Rr459783	regulatory region 459783	1606 bp proximal
Tssr111730	transcription start site region 111730	1884 bp downstream